Welcome to REDfly Regulatory Element Database for Drosophila and other insects v9.6.6
About REDfly
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REDfly is a collaboration between the
Halfon lab and the
Center for Computational Research at the
University at Buffalo.
The REDfly team respects the diversity of all individuals,
regardless of race, ethnicity, sex, disability, religion, gender identification,
or sexual orientation.
Using REDfly:
Please see our User's Guide for more information.
Citing REDfly:
When referencing specific CRMs, please be sure to include a reference to the original discoverers
(cited in the "cite" tab or under "PMID" in the GFF-formatted download).
-
Keränen, S.V.E., Villahoz-Baleta, A., Bruno, A.E., and Halfon, M.S. (2022).
REDfly: An integrated knowledgebase for insect regulatory genomics. Insects, 13:618;
doi: 10.3390/ insects13070618
- Rivera, John, Keränen, Soile V. E., Gallo, Steven M. and Halfon, Marc S. (2018).
REDfly: the transcriptional regulatory element database for Drosophila.
Nucleic Acids Res.;
doi:10.1093/nar/gky957
- Gallo, S.M., Gerrard, D.T., Miner, D., Simich, M., Des Soye, B., Bergman, C.M. and Halfon, M.S. (2010).
REDfly v3.0: Toward a comprehensive database of transcriptional regulatory elements in Drosophila.
Nucleic Acids Res.;
doi:39/suppl_1/D118/2509243
- Halfon, M.S., Gallo, S.M., and Bergman, C.M. (2008).
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
Nucleic Acids Res. 36, D594-598;
doi:36/suppl_1/D594/7632242
- Gallo, S. M., Li, L., Hu, Z. and Halfon, M. S. (2006).
REDfly: a regulatory element database for Drosophila.
Bioinformatics, Vol. 22 no. 3 2006, pages 381-383;
doi:22/3/381/220380
- Bergman, C. M., Carlson, J. W. and Celniker, S. E. (2005).
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
Bioinformatics, Vol. 21 no. 5 2005, pages 1747-1749;
doi:21/8/1747/249595
REDfly licensing statement:
The REDfly database is licensed under a
Creative Commons Attribution-NonCommercial-NoDerivatives License v4 International 
(CC BY-NC-ND 4.0)
and its underlying source code under a
GNU General Public License v3 (GNU GPL 3.0).
See
disclaimer.
About our logo:
The REDfly logo was designed by
Alex Read as part of the
GMOD Spring 2010 Logo Program.
Funding Support:
REDfly is funded in part by
National Institutes of Health grant
U24 GM142435. Previous support was provided by
NIH grant
R01 GM114067 and
National Science Foundation grants
DBI-1758252 and
DBI-1355511.
Database:
REDfly utilizes the
MariaDB database. A schema diagram can be found
here.
We would like to give special thanks to our student curators from the following classes:
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