v9.6.6 (Database Updated 09/09/2024)
Database updated on 09/09/2024 with 373 changes
Gene Annotation Version 6.59
Anatomy Ontology Version 2024-08-08
Gene Annotation Version 6.59
Anatomy Ontology Version 2024-08-08
v9.6.6 (Database Updated 09/09/2024)
|
Welcome to REDfly
Regulatory Element Database for Drosophila and other insects v9.6.6
Additional Resources
Tools for working with REDfly data
BEDTools software is useful for working with downloaded REDfly data in BED format Galaxy might be a better solution for those with limited computational know-how. Look for tools to work with REDfly data in Galaxy to be added to this site in the future. Utility script: SelectSmallestFeature.py Use this Python script with REDfly CRM sequences in sorted BED fortmat to cluster any overlapping sequences and select the set of shortest non-overlapping intervals from each cluster. Helpful for constructing SCRMshaw training sets and other uses. Links to other data collections
FlyBase maintains a list of links and resources here including listings of Transcription Regulation Databases and Gene Expression Databases FlyMine Drosophila Chromatin Maps
Drosophila Regulatory Elements and Binding Sites
Bergman lab curated motif models CORE core promoter database (Juven-Gershon lab) Dan Pollard's matrices Drosophila Core Promoter Database Drosophila melanogaster Major Position Matrix Motifs (DMMPMM) EvoPrinterHD FlyEnhancer (Stark lab) FlyFactorSurvey FlyLight (Janelia Farms) OnTheFly The JASPAR datbase The Transfac database UniProbe database (Bulyk lab) Drosophila Gene Expression Patterns
|
Copyright © University at Buffalo—State University of New York.
REDfly is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
See License. |
